{
  "_id": "6a10220dacfb0bcc41c8c95e",
  "Package": "isocat",
  "Type": "Package",
  "Title": "Isotope Origin Clustering and Assignment Tools",
  "Version": "2.0.0.9000",
  "Authors@R": "person(\n\"Caitlin\", \"Campbell\",\nemail = \"caitjcampbell@gmail.com\",\ncomment = c(ORCID = \"0000-0002-8199-7775\"),\nrole = c(\"aut\", \"cre\")\n)",
  "Description": "This resource provides tools to create, compare, and\npost-process spatial isotope assignment models of animal\norigin. It generates probability-of-origin maps for individuals\nbased on user-provided tissue and environment isotope values\n(e.g., as generated by IsoMAP, Bowen et al. [2013]\n<doi:10.1111/2041-210X.12147>) using the framework established\nin Bowen et al. (2010)\n<doi:10.1146/annurev-earth-040809-152429>). The package\n'isocat' can then quantitatively compare and cluster these maps\nto group individuals by similar origin. It also includes\ntechniques for applying four approaches (cumulative sum, odds\nratio, quantile only, and quantile simulation) with which users\ncan summarize geographic origins and probable distance traveled\nby individuals. Campbell et al. [2020] establishes several of\nthe functions included in this package\n<doi:10.1515/ami-2020-0004>.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "LazyData": "true",
  "RoxygenNote": "7.2.2",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://cjcampbell.r-universe.dev",
  "Date/Publication": "2024-06-10 15:33:51 UTC",
  "RemoteUrl": "https://github.com/cjcampbell/isocat",
  "RemoteRef": "HEAD",
  "RemoteSha": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 05:13:07 UTC",
    "User": "root"
  },
  "Author": "Caitlin Campbell [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-8199-7775>)",
  "Maintainer": "Caitlin Campbell <caitjcampbell@gmail.com>",
  "MD5sum": "b5356343361b283492d18935706b302f",
  "_user": "cjcampbell",
  "_type": "src",
  "_file": "isocat_2.0.0.9000.tar.gz",
  "_fileid": "c296e980a24b067915826dd9590cc3b1c046ec8c360d813b20656a9fb03e48f8",
  "_filesize": 943602,
  "_sha256": "c296e980a24b067915826dd9590cc3b1c046ec8c360d813b20656a9fb03e48f8",
  "_created": "2026-05-14T05:13:07.000Z",
  "_published": "2026-05-22T09:29:49.378Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77352928302,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "6987652482"
    },
    {
      "job": 77352928683,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "6987652508"
    },
    {
      "job": 77352928628,
      "time": 127,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "6987810821"
    },
    {
      "job": 77352928376,
      "time": 130,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "6987806730"
    },
    {
      "job": 77352928401,
      "time": 182,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "6987625823"
    },
    {
      "job": 77352927886,
      "time": 128,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157294204"
    },
    {
      "job": 77352928767,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "6987645885"
    },
    {
      "job": 77352928779,
      "time": 73,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "6987639339"
    },
    {
      "job": 77352928719,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "6987641230"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cjcampbell/isocat",
  "_commit": {
    "id": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
    "author": "Caitlin J Campbell <cjcampbell@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #6 from cjcampbell/isocatv2\n\nDevelopment to v2",
    "time": 1718033631
  },
  "_maintainer": {
    "name": "Caitlin Campbell",
    "email": "caitjcampbell@gmail.com",
    "login": "cjcampbell",
    "orcid": "0000-0002-8199-7775",
    "uuid": 11843815
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "terra",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "sp",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Suggests"
    },
    {
      "package": "doParallel",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    },
    {
      "package": "kableExtra",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "parallel",
      "role": "Suggests"
    },
    {
      "package": "pvclust",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "raster",
      "role": "Suggests"
    },
    {
      "package": "rasterVis",
      "role": "Suggests"
    },
    {
      "package": "viridisLite",
      "role": "Suggests"
    }
  ],
  "_owner": "cjcampbell",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "cjcampbell",
      "count": 150,
      "uuid": 11843815
    }
  ],
  "_userbio": {
    "uuid": 11843815,
    "type": "user",
    "name": "Caitlin J Campbell"
  },
  "_downloads": {
    "count": 193,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/isocat"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/cjcampbell/isocat",
  "_searchresults": 21,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/isocat.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/cjcampbell/isocat",
  "_realowner": "cjcampbell",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.3",
      "date": "2019-06-07"
    },
    {
      "version": "0.2.4",
      "date": "2019-12-11"
    },
    {
      "version": "0.2.5",
      "date": "2020-03-28"
    },
    {
      "version": "0.2.6",
      "date": "2020-07-03"
    },
    {
      "version": "0.3.0",
      "date": "2024-02-16"
    }
  ],
  "_exports": [
    ".assignmentMaker",
    ".normprodrast",
    "clusterSimmatrix",
    "cumsumAtSamplingLocation",
    "cumsumbelow",
    "getPrecisionPar",
    "isotopeAssignmentModel",
    "makecumsumSurface",
    "makeMultiMonthIsoscape",
    "makeOddsSurfaces",
    "makeQuantileSimulationSurface",
    "makeQuantileSurfaces",
    "meanAggregateClusterProbability",
    "oddsAtSamplingLocation",
    "projectSummaryMaxSurface",
    "quantileAtSamplingLocation",
    "schoenersD",
    "schoenersDsimmatrix",
    "simmatrixMaker"
  ],
  "_datasets": [
    {
      "name": "isoscape",
      "title": "Example isoscape data",
      "object": "isoscape",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "y",
        "predkrig"
      ],
      "rows": 1800,
      "table": true,
      "tojson": true
    },
    {
      "name": "isoscape_sd",
      "title": "Example isoscape standard deviation data",
      "object": "isoscape_sd",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "y",
        "stdkrig"
      ],
      "rows": 1800,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "clusterSimmatrix",
      "title": "Hierarchical clustering analysis of similarity matrix",
      "topics": [
        "clusterSimmatrix"
      ]
    },
    {
      "page": "cumsumAtSamplingLocation",
      "title": "Cumulative sum at coordinates",
      "topics": [
        "cumsumAtSamplingLocation",
        "cumsum_at_point"
      ]
    },
    {
      "page": "cumsumbelow",
      "title": "Cumulative sum below value",
      "topics": [
        "cumsumbelow"
      ]
    },
    {
      "page": "getPrecisionPar",
      "title": "Calculate model precision at given threshold values (in parallel).",
      "topics": [
        "getPrecisionPar"
      ]
    },
    {
      "page": "isoscape",
      "title": "Example isoscape data",
      "topics": [
        "isoscape"
      ]
    },
    {
      "page": "isoscape_sd",
      "title": "Example isoscape standard deviation data",
      "topics": [
        "isoscape_sd"
      ]
    },
    {
      "page": "isotopeAssignmentModel",
      "title": "Isotope assignment model function",
      "topics": [
        "isotopeAssignmentModel"
      ]
    },
    {
      "page": "makecumsumSurface",
      "title": "Create cumulative sum probability surface",
      "topics": [
        "cumsum_surface",
        "makecumsumSurface"
      ]
    },
    {
      "page": "makeMultiMonthIsoscape",
      "title": "Make mean multi-month isoscape and error surfaces.",
      "topics": [
        "makeMultiMonthIsoscape"
      ]
    },
    {
      "page": "makeOddsSurfaces",
      "title": "Convert probability surface to odds-ratio surface",
      "topics": [
        "makeOddsSurfaces",
        "odds_surface"
      ]
    },
    {
      "page": "makeQuantileSimulationSurface",
      "title": "Create quantile-simulation surfaces",
      "topics": [
        "makeQuantileSimulationSurface"
      ]
    },
    {
      "page": "makeQuantileSurfaces",
      "title": "Convert probability surface to probability-quantile surface",
      "topics": [
        "makeQuantileSurfaces",
        "quantile_surface"
      ]
    },
    {
      "page": "meanAggregateClusterProbability",
      "title": "Create mean aggregate probability-of-origin surfaces for each cluster.",
      "topics": [
        "meanAggregateClusterProbability"
      ]
    },
    {
      "page": "oddsAtSamplingLocation",
      "title": "Odds ratio at coordinates function",
      "topics": [
        "oddsAtSamplingLocation",
        "odds_at_point"
      ]
    },
    {
      "page": "projectSummaryMaxSurface",
      "title": "Project probability-of-origin surfaces into one summary surface.",
      "topics": [
        "projectSummaryMaxSurface"
      ]
    },
    {
      "page": "quantileAtSamplingLocation",
      "title": "Quantile at coordinates function",
      "topics": [
        "quantileAtSamplingLocation",
        "quantile_at_point"
      ]
    },
    {
      "page": "schoenersD",
      "title": "Calculates Schoener's D-value between two RasterLayers.",
      "topics": [
        "schoenersD"
      ]
    },
    {
      "page": "schoenersDsimmatrix",
      "title": "Generates similarity matrix for SpatRaster objects in environment.",
      "topics": [
        "schoenersDsimmatrix"
      ]
    },
    {
      "page": "simmatrixMaker",
      "title": "Generates similarity matrix for RasterStack",
      "topics": [
        "simmatrixMaker"
      ]
    }
  ],
  "_readme": "https://github.com/cjcampbell/isocat/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "foreach",
    "iterators",
    "lattice",
    "magrittr",
    "plyr",
    "Rcpp",
    "sp",
    "terra"
  ],
  "_score": 3.4983105537896004,
  "_indexed": true,
  "_nocasepkg": "isocat",
  "_universes": [
    "cjcampbell"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:15:43.000Z",
      "distro": "noble",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "0d9d07a58714eee63d7d9a887638c68cdd63ed30a6fa5c0bb8375b6ab72c5a8d",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:15:43.000Z",
      "distro": "noble",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "bed2d32a8c99c5a02327c3f1db70eca2e50d6917e4ee9ea4e04fe62994eb33f3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:29:17.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "aa50f542f1291ff9f901629ed3ba82317ffdfe9dca40c16b735d9b124a0799b0",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:28:47.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "53409e231d69a9b089367954feb14ec9a83994bcdcf3c433c6c7bfdae89c113b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:15:09.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "96d4803e4e20ba5cd290c36368b206026c429813358edfb8ad55591f2da5ea75",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:14:32.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "a4776c19dd791d60777976e8b55f88fbeba2212d7f457c0a276cd15db98d93b8",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.0.9000",
      "date": "2026-05-14T05:14:41.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "7292d8486162587c006cb77a9f68a7fe55c5d4e596ed8f2027a0da9d173c536e",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.0.9000",
      "date": "2026-05-22T09:29:30.000Z",
      "commit": "750a9767235fdd5b456b4ea109672fb4e6a0b236",
      "fileid": "152dc46423a04a429b2e848f4d3c067e75ae58f50ec21c7237af5955bfa959ae",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cjcampbell/actions/runs/25784338373"
    }
  ]
}